TAKLAB

PUBLICATION

論文/Reviewed paper

      2024

    1. Ryuji KONDO, and Takafumi KATAOKA*, 「Whole-genome sequence of the strictly anaerobic bacterial strain SANA belonging to the family Gottschalkiaceae, isolated from a xenic culture of an anaerobic protist」, 『Microbiology Resource Announcements』, 2024, Accepted on Feb 26nd.
    2. Yuka MACHII, Mao TSUKAMOTO, Takafumi KATAOKA, and Ryuji KONDO*, 「Whole-genome sequence of a marine bacterial strain FRT2 belonging to the genus Leeuwenhoekiella, isolated from seawater of the Obama Bay in Fukui, Japan」, 『Microbiology Resource Announcements』, 2024, Accepted on Feb 19th.

      3. 2023

    3. Ryuji KONDO, Takafumi KATAOKA*, 「Whole-genome sequence of a sulfate-reducing bacterial strain SYK isolated from a xenic culture of an anaerobic protist」, 『Microbiology Resource Announcements』, 2023, 13th, Feb.
    4. Takafumi KATAOKA, Ryo SUGIMOTO, Atsushi KANEDA, Haruyo YAMAGUCHI, Takahito RIHEI and Shinya YAMASHITA, 「Seasonal variation in the community distribution of protists off Wakasa Bay, Southern Sea of Japan」, 『Continental Shelf Research』, 2023, vol. 253(15) 104898,[Abstract&PDF] & ☞ "Link to 50 day's free access until Feb 03 2023"

      5. 2022

    5. Takafumi KATAOKA and Ryuji KONDO*, 「Genome sequence of the sulphate-reducing bacterium, Pseudodesulfovibrio portus JCM 14722T」, 『Microbiology Resource Announcements』, 2022, 5th, Nov. Accepted

      6. 2021

    6. Hiroshi Funaki, Chetan Chandrakant Gaonkar, Takafumi Kataoka, Tomohiro Nishimura, Kouki Tanaka, Ippei Yanagida, Shouta Abe, Haruo Yamaguchi, Keizo Nagasaki, Masao Adachi, 「Horizontal and vertical distribution of Gambierdiscus spp. (Dinophyceae) including novel phylotypes in Japan identified by 18S rDNA metabarcoding」, 『Harmful Algae』, 2022, vol. 111, HARALG_102163,[Abstract&PDF]
    7. Kazutoshi Yoshitake, Gaku Kimura, Tomoko Sakami, Tsuyoshi Watanabe, Yukiko Taniuchi, Shigeho Kakehi, Akira Kuwata, Haruyo Yamaguchi, Takafumi Kataoka, Masanobu Kawachi, Kazuho Ikeo, Engkong Tan, Yoji Igarashi, Masafumi Ohtsubo, Shugo Watabe, Yutaka Suzuki, Shuichi Asakawa, Sonoko Ishino, Kosuke Tashiro, Yoshizumi Ishino, Takanori Kobayashi, Katsuhiko Mineta and Takashi Gojobori, 「Development of a time-series shotgun metagenomics database for monitoring microbial communities at the Pacific coast of Japan」, 『Scientific Reports』, 2021, vol.11, 12222, DOI: https://doi.org/10.1038/s41598-021-91615-3. [Abstract&PDF]
    8. Akihiro Tuji, Haruyo Yamaguchi, Takafumi Kataoka, Mayumi Sato, Tomoharu Sano and Yuko Niiyama, 「Annamia dubia sp. nov. with a description of a new family, Geminocystaceae fam. nov. (Cyanobacteria)」, 『Fottea』, 2021, vol.21 (1), pp.100–109, DOI: 10.5507/fot.2021.003. [Abstract&PDF]

      9. 2019

    9. Takafumi Kataoka, Kako Ohbayashi, Yuki Kobayashi, Hiroyuki Takasu, Shin-ichi Nakano, Ryuji Kondo1, Yoshikuni Hodoki, 「Distribution of harmful-bloom-forming cyanobacterium, Microcystis aeruginosa, in 88 freshwater environments across Japan」, 『Microbes and Environments』, Nakanishi printing co., 2019, vol.35, 1, pp.1-8, DOI=https://doi.org/10.1264/jsme2.ME19110. [Abstract&PDF]
    10. Shigekatsu Suzuki, Takafumi Kataoka, Tsuyoshi Watanabe, Haruyo Yamaguchi, Akira Kuwata, and Masanobu Kawachi, 「Depth-dependent transcriptomic response of diatoms during spring bloom in the western subarctic Pacific Ocean」, 『Scientific Reports』, NATURE publishing, 2019, vol.9: 14559, DOI: https://doi.org/10.1038/s41598-019-51150-8. [Abstract&PDF].
    11. Takafumi Kataoka and Ryuji Kondo, 「Data on taxonomic annotation and diversity of 18S rRNA gene amplicon libraries derived from high throughput sequencing」, Data in Brief, ELSEVIER publishing, 2019, vol.25, DOI: https://doi.org/10.1016/j.dib.2019.104213. [Abstract&PDF].
    12. Takafumi Kataoka and Ryuji Kondo, 「Protistan community composition in anoxic sediments from three salinity disparate Japanese lakes」, Estuarine, Coastal and Shelf Science, ELSEVIER publishing, 2019, vol.224, pp.34-42, DOI: https://doi.org/10.1016/j.ecss.2019.04.046. [Abstract&PDF]
    13. Takafumi Kataoka, Atsushi Ooki, and Daiki Nomura, 「Production of dibromomethane and change in bacterial community in bromoform-enriched seawater」, Microbes and Environments, Nakanishi printing co., 2019, vol.34, 2, pp.215-218, DOI=https://doi.org/10.1264/jsme2.ME18027. [Abstract&PDF]

      14. 2018

    14. Takafumi Kataoka, Satoshi Mitsunobu, and Natsuko Hamamura, 「The influence of chemical form of antimony on soil microbial community structure and arsenite oxidation activity」, Microbes and Environments, Nakanishi printing co., 2018, vol.33, 2, pp.214-221, DOI: https://doi.org/10.1264/jsme2.ME17182. [Abstract&PDF]
    15. Tazro Ohta, Takeshi Kawashima, Natsuko O. Shinozaki, Akito Dobashi, Satoshi Hiraoka, Tatsuhiko Hoshino, Keiichi Kanno, Takafumi Kataoka, Shuichi Kawashima, Motomu Matsui, Wataru Nemoto, Suguru Nishijima, Natsuki Suganuma, Haruo Suzuki, Y-h. Taguchi, Yoichi Takenaka, Yosuke Tanigawa, Momoka Tsuneyoshi, Kazutoshi Yoshitake, Yukuto Sato, Riu Yamashita, Kazuharu Arakawa, and Wataru Iwasaki, 「Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis ‘Somei-yoshino’ across the Japanese archipelago」, Journal of Plant Research, Springer, 2018, DOI: https://doi.org/10.1007/s10265-018-1017-x. [Abstract&PDF]
    16. Takafumi Kataoka, Koji Suzuki, Tomohisa Irino, Masanobu Yamamoto, Seigo Higashi, and Hongbin Liu, 「Phylogenetic diversity and distribution of bacterial and archaeal amoA genes in the East China Sea during spring」, Archives of Microbiology, Springer, 2017, vol.200 (2), pp.329-342, DOI: 10.1007/s00203-017-1442-6. [Abstract&PDF]

      17. 2017

    17. Takafumi Kataoka, Haruyo Yamaguchi, Mayumi Sato, Tsuyoshi Watanabe, Yukiko Taniuchi, Akira Kuwata and Masanobu Kawachi, 「Seasonal and geographical distribution of near-surface small photosynthetic-eukaryotes in the western North Pacific determined by pyrosequencing of 18S rDNA」, FEMS Microbiology Ecology, OXFORD UNIVERSITY PRESS, 2016, vol.93, 2,fiw229, ODI: 10.1093/femsec/fiw229. [Abstract&PDF]

      18. 2016

    18. Masanobu Kawachi, Takafumi Kataoka, Mayumi Sato, Marie-Hélène Noël, Akira Kuwata and Haruyo Yamaguchi, 「Application of cryopreservation to genetic analyses of a photosynthetic picoeukaryote community」, Gene, ELSEVIER publishing, 2016, vol.576 (2), part1, 708–716. [Abstract&PDF]
    19. Yuki Sato-Takabe, Hironori Nakao, Takafumi Kataoka, Taichi Yokokawa, Koji Hamasaki, Kohei Ohta and Satoru Suzuki, 「Abundance of common aerobic anoxygenic phototrophic bacteria in a coastal aquaculture area」, Frontiers in Microbiology: Aquatic Microbiology, 2016, https://doi.org/10.3389/fmicb.2016.01996. [Abstract&PDF]

      20. 2015

    20. Yumi Mori, Takafumi Kataoka and Ryuji Kondo, 「Use of stable isotope probing to identify bacterial species involved in CO2 fixation in the water just below the oxycline of the meromictic Lake Suigetsu, Japan」, Plankton and Benthos Research, The Plankton Society of Japan, 2015, vol.10 (2),303-312. [Abstract&PDF]
    21. Yuki Sato-Takabe, Shotaro Suzuki, Ryuki Shishikura, Koji Hamasaki, Yuya Tada, Takafumi Kataoka, Taichi Yokokawa, Naoki Yoshie, and Satoru Suzuki, 「Spatial distribution and cell size of aerobic anaxygenic phototrophic bacteria in the Uwa Sea Japan」, Journal of Oceanography, Springer publishing, 2015, vol.71 (1), 151-159. [Abstract&PDF]

      22. 2013

    22. Takafumi Kataoka, Takamitsu Homma, Shin-ichi Nakano, Yoshikuni Hodoki, Kako Ohbayashi and Ryuji Kondo, 「PCR primers for selective detection of intra-species variations in the bloom-forming cyanobacterium, Microcystis」, Harmful Algae, ELSEVIER publishing, 2013, vol.23, 1, pp.46-54. [Abstract&PDF], ODI:10.1016/j.hal.2012.12.003.
    23. Liangliang Kong, Hongmei Jing, Takafumi Kataoka, Carolyn Buchwald, and Hongbin Liu, 「Diversity and spatial distribution of Hydrazine oxidoreductase (hzo) gene in the oxygen minimum zone off Costa Rica」, PLoS ONE, Public Library of Science (PLoS), 2013, vol.8 (10), e78275. [Abstract&PDF]
    24. Satoshi Mitsunobu, Natsuko Hamamura, Takafumi Kataoka, and Fumito Shiraishi, 「Arsenic attenuation in geothermal streamwater coupled with biogenic arsenic(III) oxidation」, Applied Geochemistry,ELSEVIER publishing, 2013, vol.35, pp.154–160. [Abstract&PDF]
    25. Yumi Mori, Takafumi Kataoka, Takahiko Okamura and Ryuji Kondo, 「Dominance of green sulfur bacteria in the chemocline of the meromictic Lake Suigetsu, Japan, as revealed by dissimilatory sulfite reductase gene analysis」, Archives of Microbiology,Springer publishing, 2013, vol.195, 5, pp.303–312, DOI: 10.1007/s00203-013-0879-5. [Abstract&PDF]
    26. Hisashi Endo,Takeshi Yoshimura, Takafumi Kataoka and Koji Suzuki, 「Effects of CO2 and iron availability on phytoplankton and eubacterial community compositions in the northwest subarctic Pacific」, Journal of Experimental Marine Biology and Ecology, ELSEVIER publishing, 2013, vol.439, pp.160–175. [Abstract&PDF]

      27. 2011

    27. Liangliang Kong, Hongmei Jing, Takafumi Kataoka, Jun Sun and Hongbin Liu, 「Phylogenetic diversity and spatio-temporal distribution of nitrogenase genes (nifH) in the northern South China Sea」, Aquatic Microbial Ecology, Inter–Research publishing, 2011, vol.65, pp.15-27 [doi: 10.3354/ame01531]. [Abstract&PDF]

      28. 2009

    28. Takafumi Kataoka, Koji Suzuki, Maki Hayakawa, Isao Kudo, Seigo Higashi and Atsushi Tsuda, 「Temporal changes in community composition of heterotrophic bacteria during in situ iron enrichment in the western subarctic Pacific (SEEDS-II)」, Deep-Sea Research part II Topical studies in oceanography special issue, ELSEVIER publishing, 2009c, vol.56, 26, pp.2779-2787. [Abstract&PDF].
    29. Takafumi Kataoka, Yoshikuni Hodoki, Koji Suzuki, Hiroaki Saito and Seigo Higashi, 「Detection of UVBR-sensitive and -tolerant bacteria in surface waters of the western North Pacific」, Journal of Photochemistry and Photobiology B: Biology, ELSEVIER publishing, 2009b, vol.95, 2, pp.108-116. [Abstract&PDF]
    30. Takafumi Kataoka, Yoshikuni Hodoki, Koji Suzuki, Hiroaki Saito and Seigo Higashi, 「Tempo-spatial patterns of bacterial community composition in the western North Pacific Ocean」, Journal of Marine Systems, ELSEVIER publishing, 2009a, vol.77, 1-2, pp.197-207 . [Abstract&PDF]

    著書/Book

        2023

      1. 片岡 剛文, 「海洋の原生生物」 原生生物の生態学・環境と生態 『原生生物学事典』（朝倉書店）, 矢﨑 裕規・新倉 保・猪飼 桂・矢吹 彬憲・永宗 喜三郎・松崎 素道・白鳥 峻志・島野 智之・小林 富美惠(編) 2023年5月10日
    inserted by FC2 system